IL_7KGB_005

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

7KGB|1|A|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_005 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.1266

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

7KGB|1|A|G|81
7KGB|1|A|G|82
7KGB|1|A|G|83
7KGB|1|A|A|84
7KGB|1|A|G|85
*
7KGB|1|A|C|98
7KGB|1|A|G|99
7KGB|1|A|U|100
7KGB|1|A|G|101
7KGB|1|A|G|102
7KGB|1|A|A|103
7KGB|1|A|U|104
7KGB|1|A|C|105

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24

Chain Y

50S ribosomal protein L29