IL_7KGB_065

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_065 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3661

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7KGB|1|A|C|1711
7KGB|1|A|G|1712
7KGB|1|A|G|1713
7KGB|1|A|U|1714
7KGB|1|A|A|1715
7KGB|1|A|G|1716
*
7KGB|1|A|U|1752
7KGB|1|A|G|1753
7KGB|1|A|A|1754
7KGB|1|A|G|1755
7KGB|1|A|A|1756
7KGB|1|A|G|1757

Current chains

Chain A

23S rRNA

Nearby chains