IL_7KGB_075

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

7KGB|1|A|G|2035, 7KGB|1|A|U|2050, 7KGB|1|A|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_075 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.083

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7KGB|1|A|U|2032
7KGB|1|A|G|2033
7KGB|1|A|C|2034
7KGB|1|A|G|2035
7KGB|1|A|A|2036
7KGB|1|A|A|2037
7KGB|1|A|G|2038
*
7KGB|1|A|C|2047
7KGB|1|A|G|2048
7KGB|1|A|A|2049
7KGB|1|A|U|2050
7KGB|1|A|G|2051
7KGB|1|A|U|2052
7KGB|1|A|A|2053
7KGB|1|A|U|2054
7KGB|1|A|A|2055

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA