IL_7KGB_111

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGAAG*UGUAG

Length

11 nucleotides

Bulged bases

7KGB|1|A|U|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_111 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1549

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

7KGB|1|A|U|3082
7KGB|1|A|G|3083
7KGB|1|A|G|3084
7KGB|1|A|A|3085
7KGB|1|A|A|3086
7KGB|1|A|G|3087
*
7KGB|1|A|U|3100
7KGB|1|A|G|3101
7KGB|1|A|U|3102
7KGB|1|A|A|3103
7KGB|1|A|G|3104

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19