IL_7KGB_112

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_112 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.2152

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7KGB|1|B|U|2
7KGB|1|B|A|3
7KGB|1|B|C|4
*
7KGB|1|B|G|111
7KGB|1|B|A|112
7KGB|1|B|A|113

Current chains

Chain B

5S rRNA

Nearby chains

Chain O

50S ribosomal protein L18