IL_7KGB_117
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7KGB_117 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.092
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7KGB|1|B|C|70
7KGB|1|B|G|71
7KGB|1|B|A|72
7KGB|1|B|U|73
7KGB|1|B|G|74
7KGB|1|B|A|75
7KGB|1|B|U|76
7KGB|1|B|A|77
7KGB|1|B|C|78
*
7KGB|1|B|G|93
7KGB|1|B|A|94
7KGB|1|B|A|95
7KGB|1|B|A|96
7KGB|1|B|A|97
7KGB|1|B|G|98
7KGB|1|B|U|99
7KGB|1|B|A|100
7KGB|1|B|G|101
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: