IL_7KGB_178

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_178 not in the Motif Atlas

Geometric match to IL_5MWI_004

Geometric discrepancy: 0.13

The information below is about IL_5MWI_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7KGB|1|a|G|1398
7KGB|1|a|U|1399
7KGB|1|a|C|1400
*
7KGB|1|a|G|1487
7KGB|1|a|U|1488
7KGB|1|a|C|1489

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain y

Transfer RNA; tRNA