IL_7LH5_093

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

7LH5|1|BA|U|1142, 7LH5|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_093 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1086

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7LH5|1|BA|C|1018
7LH5|1|BA|U|1019
7LH5|1|BA|A|1020
7LH5|1|BA|A|1021
7LH5|1|BA|G|1022
7LH5|1|BA|U|1023
7LH5|1|BA|G|1024
*
7LH5|1|BA|C|1140
7LH5|1|BA|U|1141
7LH5|1|BA|U|1142
7LH5|1|BA|A|1142|||A
7LH5|1|BA|A|1143
7LH5|1|BA|G|1144

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13