IL_7LH5_096

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7LH5|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_096 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.1165

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7LH5|1|BA|C|1196
7LH5|1|BA|G|1197
7LH5|1|BA|U|1198
*
7LH5|1|BA|A|1247
7LH5|1|BA|G|1248
7LH5|1|BA|U|1249
7LH5|1|BA|G|1250

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15

Chain BU

50S ribosomal protein L20