IL_7LH5_118

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

7LH5|1|BA|G|1801, 7LH5|1|BA|G|1816, 7LH5|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_118 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0594

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7LH5|1|BA|U|1798
7LH5|1|BA|G|1799
7LH5|1|BA|C|1800
7LH5|1|BA|G|1801
7LH5|1|BA|A|1802
7LH5|1|BA|A|1803
7LH5|1|BA|C|1804
*
7LH5|1|BA|G|1813
7LH5|1|BA|G|1814
7LH5|1|BA|A|1815
7LH5|1|BA|G|1816
7LH5|1|BA|G|1817
7LH5|1|BA|U|1818
7LH5|1|BA|A|1819
7LH5|1|BA|U|1820
7LH5|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2