IL_7LH5_133

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

7LH5|1|BA|C|2111, 7LH5|1|BA|G|2116, 7LH5|1|BA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_133 not in the Motif Atlas

Geometric match to IL_4V88_419

Geometric discrepancy: 0.1884

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7LH5|1|BA|G|2110
7LH5|1|BA|C|2111
7LH5|1|BA|G|2112
7LH5|1|BA|U|2113
7LH5|1|BA|A|2114
7LH5|1|BA|G|2115
7LH5|1|BA|G|2116
7LH5|1|BA|A|2117
7LH5|1|BA|U|2118
7LH5|1|BA|A|2119
7LH5|1|BA|G|2120
7LH5|1|BA|G|2121
*
7LH5|1|BA|C|2177
7LH5|1|BA|C|2178
7LH5|1|BA|C|2179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1