IL_7LH5_137

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

7LH5|1|BA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_137 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.2862

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7LH5|1|BA|U|2401
7LH5|1|BA|C|2402
7LH5|1|BA|C|2403
*
7LH5|1|BA|G|2414
7LH5|1|BA|G|2415

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15