IL_7LH5_183

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7LH5|1|CA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_183 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0942

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7LH5|1|CA|C|569
7LH5|1|CA|G|570
7LH5|1|CA|U|571
7LH5|1|CA|A|572
7LH5|1|CA|A|573
7LH5|1|CA|A|574
7LH5|1|CA|G|575
*
7LH5|1|CA|C|880
7LH5|1|CA|G|881

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S ribosomal protein S5

Chain CL

30S ribosomal protein S12