IL_7LH5_226

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_226 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0685

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7LH5|1|DA|U|239
7LH5|1|DA|G|240
7LH5|1|DA|A|241
7LH5|1|DA|G|242
7LH5|1|DA|U|243
7LH5|1|DA|A|244
7LH5|1|DA|G|245
*
7LH5|1|DA|C|253
7LH5|1|DA|G|254
7LH5|1|DA|A|255
7LH5|1|DA|A|256
7LH5|1|DA|A|257
7LH5|1|DA|G|258

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DP

50S ribosomal protein L15