IL_7LH5_236

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7LH5|1|DA|G|801, 7LH5|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_236 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0909

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

7LH5|1|DA|G|674
7LH5|1|DA|A|675
7LH5|1|DA|A|676
7LH5|1|DA|A|677
7LH5|1|DA|C|678
*
7LH5|1|DA|G|799
7LH5|1|DA|A|800
7LH5|1|DA|G|801
7LH5|1|DA|A|802
7LH5|1|DA|U|803
7LH5|1|DA|A|804
7LH5|1|DA|G|805
7LH5|1|DA|C|806

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15