IL_7LH5_283

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_283 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2735

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7LH5|1|DA|U|1851
7LH5|1|DA|C|1852
7LH5|1|DA|A|1853
7LH5|1|DA|A|1854
7LH5|1|DA|G|1855
*
7LH5|1|DA|C|1887
7LH5|1|DA|G|1888
7LH5|1|DA|A|1889
7LH5|1|DA|A|1890
7LH5|1|DA|G|1891

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2