IL_7LH5_322

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CCCGCC*GGUGUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_322 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3276

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7LH5|1|AA|C|186
7LH5|1|AA|C|187
7LH5|1|AA|C|188
7LH5|1|AA|G|189
7LH5|1|AA|C|189|||A
7LH5|1|AA|C|189|||B
*
7LH5|1|AA|G|189|||I
7LH5|1|AA|G|189|||J
7LH5|1|AA|U|189|||K
7LH5|1|AA|G|189|||L
7LH5|1|AA|U|190
7LH5|1|AA|G|191

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20