IL_7LH5_325

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

7LH5|1|AA|U|1257, 7LH5|1|AA|C|1260, 7LH5|1|AA|C|1277, 7LH5|1|AA|A|1280, 7LH5|1|AA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LH5|1|AA|G|1255
7LH5|1|AA|A|1256
7LH5|1|AA|U|1257
7LH5|1|AA|G|1258
7LH5|1|AA|C|1259
7LH5|1|AA|C|1260
7LH5|1|AA|A|1261
7LH5|1|AA|C|1262
*
7LH5|1|AA|G|1273
7LH5|1|AA|G|1274
7LH5|1|AA|A|1275
7LH5|1|AA|G|1276
7LH5|1|AA|C|1277
7LH5|1|AA|U|1278
7LH5|1|AA|A|1279
7LH5|1|AA|A|1280
7LH5|1|AA|U|1281
7LH5|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein Thx