IL_7LH5_366

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

7LH5|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_366 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1297

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7LH5|1|CA|G|409
7LH5|1|CA|G|410
7LH5|1|CA|A|411
7LH5|1|CA|A|412
7LH5|1|CA|G|413
7LH5|1|CA|A|414
7LH5|1|CA|A|415
7LH5|1|CA|G|416
*
7LH5|1|CA|U|427
7LH5|1|CA|G|428
7LH5|1|CA|U|429
7LH5|1|CA|A|430
7LH5|1|CA|A|431
7LH5|1|CA|A|432
7LH5|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4