IL_7LS1_003

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_003 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1319

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS1|1|A2|G|16
7LS1|1|A2|A|17
7LS1|1|A2|C|18
*
7LS1|1|C2|G|139
7LS1|1|C2|C|140
7LS1|1|C2|C|141

Current chains

Chain A2

28S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain H1

60S ribosomal protein L15

Chain R2

60S ribosomal protein L23a

Chain b2

60S ribosomal protein L35