IL_7LS1_007

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

7LS1|1|A2|G|119, 7LS1|1|A2|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|118
7LS1|1|A2|G|119
7LS1|1|A2|A|120
7LS1|1|A2|A|121
7LS1|1|A2|U|122
*
7LS1|1|A2|A|147
7LS1|1|A2|A|148
7LS1|1|A2|A|149
7LS1|1|A2|U|150
7LS1|1|A2|G|151
7LS1|1|A2|U|152
7LS1|1|A2|G|153

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain H1

60S ribosomal protein L15

Chain b2

60S ribosomal protein L35