IL_7LS1_015

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7LS1|1|A2|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_015 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.1948

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7LS1|1|A2|G|199
7LS1|1|A2|U|200
7LS1|1|A2|C|201
*
7LS1|1|A2|G|214
7LS1|1|A2|C|215

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S2

60S ribosomal protein L26