IL_7LS1_034

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

7LS1|1|A2|U|514, 7LS1|1|A2|U|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_034 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.1695

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

7LS1|1|A2|U|513
7LS1|1|A2|U|514
7LS1|1|A2|U|515
7LS1|1|A2|C|516
*
7LS1|1|A2|G|654
7LS1|1|A2|G|655

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13