IL_7LS1_041

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGG*CUC

Length

7 nucleotides

Bulged bases

7LS1|1|A2|U|748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_041 not in the Motif Atlas

Geometric match to IL_4V88_419

Geometric discrepancy: 0.2278

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7LS1|1|A2|G|747
7LS1|1|A2|U|748
7LS1|1|A2|G|749
7LS1|1|A2|G|750
*
7LS1|1|A2|C|820
7LS1|1|A2|U|821
7LS1|1|A2|C|822

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain M2

60S ribosomal protein L18a