IL_7LS1_048

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUCCCG

Length

9 nucleotides

Bulged bases

7LS1|1|A2|U|1047, 7LS1|1|A2|C|1048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_048 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.3741

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7LS1|1|A2|C|937
7LS1|1|A2|U|938
7LS1|1|A2|C|939
*
7LS1|1|A2|G|1046
7LS1|1|A2|U|1047
7LS1|1|A2|C|1048
7LS1|1|A2|C|1049
7LS1|1|A2|C|1050
7LS1|1|A2|G|1051

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain V2

60S ribosomal protein L29