IL_7LS1_055

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

7LS1|1|A2|G|1191, 7LS1|1|A2|C|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_055 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2638

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

7LS1|1|A2|G|1174
7LS1|1|A2|G|1175
*
7LS1|1|A2|C|1190
7LS1|1|A2|G|1191
7LS1|1|A2|C|1192
7LS1|1|A2|C|1193

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain F2

60S ribosomal protein L4

Chain H1

60S ribosomal protein L15