IL_7LS1_061

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

7LS1|1|A2|A|1463, 7LS1|1|A2|G|1467

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|1333
7LS1|1|A2|C|1334
7LS1|1|A2|OMG|1335
7LS1|1|A2|A|1336
7LS1|1|A2|A2M|1337
7LS1|1|A2|A|1338
7LS1|1|A2|G|1339
*
7LS1|1|A2|C|1461
7LS1|1|A2|U|1462
7LS1|1|A2|A|1463
7LS1|1|A2|G|1464
7LS1|1|A2|U|1465
7LS1|1|A2|A|1466
7LS1|1|A2|G|1467
7LS1|1|A2|C|1468
7LS1|1|A2|U|1469
7LS1|1|A2|G|1470

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain F2

60S ribosomal protein L4

Chain H1

60S ribosomal protein L15

Chain U2

60S ribosomal protein L27a

Chain d2

60S ribosomal protein L37