IL_7LS1_062

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

7LS1|1|A2|A|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_062 not in the Motif Atlas

Homologous match to IL_8C3A_031

Geometric discrepancy: 0.1291

The information below is about IL_8C3A_031

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7LS1|1|A2|G|1358
7LS1|1|A2|C|1359
*
7LS1|1|A2|G|1425
7LS1|1|A2|A|1426
7LS1|1|A2|C|1427

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain a2

60S ribosomal protein L34

Chain j2

60S ribosomal protein L37a