IL_7LS1_096
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 7LS1|1|A2|U|2060
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_096 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1534
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7LS1|1|A2|C|2057
7LS1|1|A2|C|2058
7LS1|1|A2|U|2059
7LS1|1|A2|U|2060
7LS1|1|A2|G|2061
7LS1|1|A2|A|2062
7LS1|1|A2|A|2063
7LS1|1|A2|G|2064
*
7LS1|1|A2|U|2084
7LS1|1|A2|G|2085
7LS1|1|A2|G|2086
7LS1|1|A2|A|2087
7LS1|1|A2|G|2088
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F2
- 60S ribosomal protein L4
- Chain S2
- 60S ribosomal protein L26
- Chain Y2
- 60S ribosomal protein L32
Coloring options: