IL_7LS1_098

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

7LS1|1|A2|A|2183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_098 not in the Motif Atlas

Geometric match to IL_4MGN_001

Geometric discrepancy: 0.3271

The information below is about IL_4MGN_001

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7LS1|1|A2|U|2170
7LS1|1|A2|G|2171
7LS1|1|A2|A|2172
7LS1|1|A2|A|2173
7LS1|1|A2|C|2174
*
7LS1|1|A2|G|2182
7LS1|1|A2|A|2183
7LS1|1|A2|A|2184

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J2

60S ribosomal protein L17

Chain L2

60S ribosomal protein L19

Chain f2

60S ribosomal protein L39