IL_7LS1_104

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUGG*C(OMG)C

Length

9 nucleotides

Bulged bases

7LS1|1|A2|G|2301

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_104 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.2536

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7LS1|1|A2|G|2297
7LS1|1|A2|A|2298
7LS1|1|A2|G|2299
7LS1|1|A2|U|2300
7LS1|1|A2|G|2301
7LS1|1|A2|G|2302
*
7LS1|1|A2|C|2527
7LS1|1|A2|OMG|2528
7LS1|1|A2|C|2529

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain e2

60S ribosomal protein L38