IL_7LS1_110

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7LS1|1|A2|U|2442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_110 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1805

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7LS1|1|A2|C|2401
7LS1|1|A2|A|2402
7LS1|1|A2|G|2403
*
7LS1|1|A2|C|2440
7LS1|1|A2|G|2441
7LS1|1|A2|U|2442
7LS1|1|A2|G|2443

Current chains

Chain A2

28S rRNA

Nearby chains

Chain a2

60S ribosomal protein L34