IL_7LS1_119

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_119 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.1303

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7LS1|1|A2|G|2644
7LS1|1|A2|C|2645
7LS1|1|A2|U|2646
*
7LS1|1|A2|A|3266
7LS1|1|A2|A|3267
7LS1|1|A2|C|3268

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain u

40S ribosomal protein S8