IL_7LS1_121

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_121 not in the Motif Atlas

Homologous match to IL_5TBW_081

Geometric discrepancy: 0.4675

The information below is about IL_5TBW_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7LS1|1|A2|U|2655
7LS1|1|A2|G|2656
7LS1|1|A2|G|2657
*
7LS1|1|A2|C|3254
7LS1|1|A2|A|3255

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11