IL_7LS1_122

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GGCGCCUAGC

Length

14 nucleotides

Bulged bases

7LS1|1|A2|G|3248, 7LS1|1|A2|C|3249, 7LS1|1|A2|U|3251, 7LS1|1|A2|A|3252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|G|2657
7LS1|1|A2|G|2658
7LS1|1|A2|U|2659
7LS1|1|A2|C|2660
*
7LS1|1|A2|G|3245
7LS1|1|A2|G|3246
7LS1|1|A2|C|3247
7LS1|1|A2|G|3248
7LS1|1|A2|C|3249
7LS1|1|A2|C|3250
7LS1|1|A2|U|3251
7LS1|1|A2|A|3252
7LS1|1|A2|G|3253
7LS1|1|A2|C|3254

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11