IL_7LS1_138
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 7LS1|1|A2|G|3734, 7LS1|1|A2|G|3736, 7LS1|1|A2|G|3737, 7LS1|1|A2|C|3814, 7LS1|1|A2|U|3815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_138 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2403
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7LS1|1|A2|G|3732
7LS1|1|A2|U|3733
7LS1|1|A2|G|3734
7LS1|1|A2|A|3735
7LS1|1|A2|G|3736
7LS1|1|A2|G|3737
7LS1|1|A2|C|3738
*
7LS1|1|A2|G|3813
7LS1|1|A2|C|3814
7LS1|1|A2|U|3815
7LS1|1|A2|C|3816
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B1
- 60S ribosomal protein L7a
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D2
- 60S ribosomal protein L8
- Chain R2
- 60S ribosomal protein L23a
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