IL_7LS1_139

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_139 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1936

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7LS1|1|A2|C|3738
7LS1|1|A2|G|3739
7LS1|1|A2|G|3740
*
7LS1|1|A2|C|3812
7LS1|1|A2|G|3813

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain D2

60S ribosomal protein L8