IL_7LS1_146

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7LS1|1|A2|A|3944

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_146 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1372

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7LS1|1|A2|G|3943
7LS1|1|A2|A|3944
7LS1|1|A2|PSU|3945
7LS1|1|A2|C|3946
*
7LS1|1|A2|G|3968
7LS1|1|A2|A|3969
7LS1|1|A2|C|3970

Current chains

Chain A2

28S rRNA

Nearby chains

Chain N2

60S ribosomal protein L21

Chain V2

60S ribosomal protein L29

Chain i2

60S ribosomal protein L36a