IL_7LS1_174

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCCGGAUAG*U(OMG)C(2MG)GAGAG

Length

19 nucleotides

Bulged bases

7LS1|1|A2|C|4409, 7LS1|1|A2|C|4410, 7LS1|1|A2|A|4416, 7LS1|1|A2|C|4516, 7LS1|1|A2|G|4518, 7LS1|1|A2|A|4519, 7LS1|1|A2|A|4521

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|4408
7LS1|1|A2|C|4409
7LS1|1|A2|C|4410
7LS1|1|A2|C|4411
7LS1|1|A2|G|4412
7LS1|1|A2|G|4413
7LS1|1|A2|A|4414
7LS1|1|A2|U|4415
7LS1|1|A2|A|4416
7LS1|1|A2|G|4417
*
7LS1|1|A2|U|4514
7LS1|1|A2|OMG|4515
7LS1|1|A2|C|4516
7LS1|1|A2|2MG|4517
7LS1|1|A2|G|4518
7LS1|1|A2|A|4519
7LS1|1|A2|G|4520
7LS1|1|A2|A|4521
7LS1|1|A2|G|4522

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I2

60S ribosomal protein L13a

Chain M2

60S ribosomal protein L18a