IL_7LS1_180

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_180 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.1634

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7LS1|1|A2|U|4530
7LS1|1|A2|C|4531
7LS1|1|A2|U|4532
7LS1|1|A2|U|4533
*
7LS1|1|A2|G|4576
7LS1|1|A2|U|4577
7LS1|1|A2|C|4578
7LS1|1|A2|A|4579

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6