IL_7LS1_183

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7LS1|1|A2|U|4545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_183 not in the Motif Atlas

Geometric match to IL_5TBW_003

Geometric discrepancy: 0.3964

The information below is about IL_5TBW_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7LS1|1|A2|G|4544
7LS1|1|A2|U|4545
7LS1|1|A2|G|4546
*
7LS1|1|A2|C|4565
7LS1|1|A2|C|4566

Current chains

Chain A2

28S rRNA

Nearby chains