IL_7LS1_200

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_200 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.193

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS1|1|m2|U|26
7LS1|1|m2|A2M|27
7LS1|1|m2|U|28
*
7LS1|1|m2|G|648
7LS1|1|m2|U|649
7LS1|1|m2|A|650

Current chains

Chain m2

28S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain L3

40S ribosomal protein S9