IL_7LS1_208

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAC*GGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_208 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.3795

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

7LS1|1|m2|U|189
7LS1|1|m2|G|190
7LS1|1|m2|A|191
7LS1|1|m2|C|192
*
7LS1|1|m2|G|209
7LS1|1|m2|G|210
7LS1|1|m2|A|211

Current chains

Chain m2

28S rRNA

Nearby chains

Chain u

40S ribosomal protein S8