IL_7LS1_215

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GU*ACC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_215 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.2621

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7LS1|1|m2|G|376
7LS1|1|m2|U|377
*
7LS1|1|m2|A|391
7LS1|1|m2|C|392
7LS1|1|m2|C|393

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L2

60S ribosomal protein L19

Chain u

40S ribosomal protein S8

Chain w2

40S ribosomal protein S11