IL_7LS1_223

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

7LS1|1|m2|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_223 not in the Motif Atlas

Geometric match to IL_4E48_004

Geometric discrepancy: 0.2329

The information below is about IL_4E48_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS1|1|m2|G|537
7LS1|1|m2|A|538
7LS1|1|m2|C|539
*
7LS1|1|m2|G|548
7LS1|1|m2|G|549
7LS1|1|m2|C|550
7LS1|1|m2|C|551

Current chains

Chain m2

28S rRNA

Nearby chains

Chain T3

40S ribosomal protein S30