IL_7LS1_226
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 7LS1|1|m2|U|609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_226 not in the Motif Atlas
- Geometric match to IL_7RQB_080
- Geometric discrepancy: 0.1711
- The information below is about IL_7RQB_080
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.16
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 116
Unit IDs
7LS1|1|m2|G|608
7LS1|1|m2|U|609
7LS1|1|m2|C|610
*
7LS1|1|m2|G|637
7LS1|1|m2|C|638
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain E3
- 40S ribosomal protein S23
- Chain L3
- 40S ribosomal protein S9
- Chain T3
- 40S ribosomal protein S30
- Chain q2
- 40S ribosomal protein S3
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