IL_7LS1_228

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_228 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1791

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

7LS1|1|m2|C|665
7LS1|1|m2|A|666
7LS1|1|m2|G|667
*
7LS1|1|m2|C|1164
7LS1|1|m2|C|1165
7LS1|1|m2|G|1166

Current chains

Chain m2

28S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain J3

40S ribosomal protein S2