IL_7LS1_238
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAC*GUUUU
- Length
- 9 nucleotides
- Bulged bases
- 7LS1|1|m2|U|1018
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_238 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.2768
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
7LS1|1|m2|G|926
7LS1|1|m2|G|927
7LS1|1|m2|A|928
7LS1|1|m2|C|929
*
7LS1|1|m2|G|1016
7LS1|1|m2|U|1017
7LS1|1|m2|U|1018
7LS1|1|m2|U|1019
7LS1|1|m2|U|1020
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain N3
- 40S ribosomal protein S13
- Chain P3
- 40S ribosomal protein S15a
- Chain S3
- 40S ribosomal protein S27-like
Coloring options: