IL_7LS1_245
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_245 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.1229
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
7LS1|1|m2|C|1049
7LS1|1|m2|G|1050
7LS1|1|m2|A|1051
7LS1|1|m2|A|1052
7LS1|1|m2|G|1053
*
7LS1|1|m2|C|1069
7LS1|1|m2|G|1070
7LS1|1|m2|U|1071
7LS1|1|m2|A|1072
7LS1|1|m2|G|1073
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D2
- 60S ribosomal protein L8
- Chain F3
- 40S ribosomal protein S26
- Chain O3
- 40S ribosomal protein S14
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