IL_7LS1_248
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_248 not in the Motif Atlas
- Geometric match to IL_4YHW_001
- Geometric discrepancy: 0.1796
- The information below is about IL_4YHW_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7LS1|1|m2|U|1103
7LS1|1|m2|G|1104
7LS1|1|m2|C|1105
*
7LS1|1|m2|G|1131
7LS1|1|m2|G|1132
7LS1|1|m2|G|1133
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain F3
- 40S ribosomal protein S26
- Chain N3
- 40S ribosomal protein S13
- Chain S3
- 40S ribosomal protein S27-like
- Chain p2
- 40S ribosomal protein S3a
- Chain z2
- 40S ribosomal protein S17
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